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How can I connect a realtime application which has a totally different life-cycle with WebApp to JBoss or GlassFish?
I need it to create a realtime reporting system. Using Sockets is not possible.
Is it possible to attach an application rather than a web applications to Java application servers so they can work together?
Yes. Java EE defines application clients, that can be any java apps.
With some full Java EE profiles, connections via CORBA should be possible and you could then also use C++ clients.
Another option to hook up any client could be messaging.