When I commit a file using egit, what is the option available to select ‘head’. Also, no files are commited when I select ‘head’. Should I not be commiting to master only ?

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You’re clearly confusing committing and pushing. The screenshot you’ve shown is about setting up specification used for pushes. To understand what this dialog talks about, read the
git-pushmanual, especially the bits dealing with the so-called “refspecs” as what that dialog supposedly is about is presenting you with a GUI interface for constructing a push refspec.