Are there any alternative to SQLite to use as embedded database engine?
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Sure. This page shows a couple non-SQLite frameworks (besides Core Data):
I have no idea how awesome these projects are, so YMMV.
If you’re looking to avoid external dependencies (ie, not shipping a framework with your app), then you’re stuck with SQLite or CoreData. CoreData can use XML as its format, but it has some disadvantages. SQLite is definitely the most recommended CoreData backend.