Considering the following :
lalist = {{{{1, 1}, 1}, {{3, 3}, 1}, {{5, 5}, 1}},
{{{1, 5}, 1}, {{3, 3}, 1}, {{5, 1}, 1}}}

Row[{
Graphics[{
Opacity[0.5],Red,
Disk @@@ lalist[[1]]},
Frame -> True],
Graphics[{
Opacity[0.5],Blue,
Disk @@@ lalist[[2]]},
Frame -> True]}
]

- Is it possible that I plot the Blues
Disks “behind” the red ones in a 3 D
plot ?
Below is not what I need :

Like this?
Lots of them with opacity .2:
and 400 don’t seem to be much of a problem in terms of speed (you can easily modify the code above to see it).
EDIT: OK, just to be silly, try this
which gives
(or something like that), rotatable, updated in real time etc.