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Home/ Questions/Q 1101567
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Editorial Team
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Editorial Team
Asked: May 17, 20262026-05-17T01:03:16+00:00 2026-05-17T01:03:16+00:00

I am trying to generate a schema from this xml file: http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?rettype=xml&retmode=xml&db=nucleotide&id=AB573763 I store

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I am trying to generate a schema from this xml file:

http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?rettype=xml&retmode=xml&db=nucleotide&id=AB573763

I store it as s.xml and then tried:

xsd s.xml

It just does not finish it – seems to be stuck in an endless loop or something. What other options do I have to generate the xsd or can you see something wrong?

Thanks.

Christian

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  1. Editorial Team
    Editorial Team
    2026-05-17T01:03:16+00:00Added an answer on May 17, 2026 at 1:03 am

    A schema generated from a single instance document is never going to be as high quality as one created from a schema as you can be almost certain that the generated schema will have distinct limitations.

    I would suggest that you download the schema from the NIH (http://www.ncbi.nlm.nih.gov/dtd/NCBI_Seqset.dtd as @Tuomas Hietanen showed) and use a tool such as James Clark’s Trang to generate a schema. Your resulting schema is likely to be of higher quality. If you have a copy of Oxygen you can simply use that as Trang is built-in.

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