Question

I have a space delimited tabular file that looks like this:

>NODE 28 length 23 cov 11.043478 ACATCCCGTTACGGTGAGCCGAAAGACCTTATGTATTTTGTGG
>NODE 32 length 21 cov 13.857142 ACAGATGTCATGAAGAGGGCATAGGCGTTATCCTTGACTGG
>NODE 33 length 28 cov 14.035714 TAGGCGTTATCCTTGACTGGGTTCCTGCCCACTTCCCGAAGGACGCAC

How can I use Unix sort to sort it by length of DNA sequence [ATCG]?

Answer 1

This pipelined Command will figure out the length also.My Unix is a bit rusty have been doing other things for a while

$ awk '{printf("%d %s\n", length($NF), $0)}' junk.lst|sort -n -k1,1|sed 's/^[0-9]* //'