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I have noticed that if I ran big queries queries – such as a complex SELECT or a REPAIR TABLE – I get much faster results if I use the command line rather than phpMyAdmin. However, appreciating a graphical interface I was wandering if using exec to send the query directly to MySQL would speed up the exectution time and why.
phpMyAdmin is heavily bloated. Command line interacts with database directly. You might want to swap, if possible, to another client.