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I need to generate multiple databases to SQL, so I need script/program to automatically generate those to SQL and generate files to jboss server. Our client server is running in Linux, but I develop on Windows machine. Should I make script with as Linux script or write Java program that could make same things?
A shell script will usually be a lot easier and quicker to develop.
Write a Java app if you need a robust, user ready application. That’s not the case here so just make your life easy.