I want to go backwards and learn more about how compilers, processors and memory operate on my programs. I am also interested in the physics on which all of this depends. Any good references or books would be appreciated…
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My first suggestion was going to be Code which has been suggested already. A better, but harder, book on the subject of processors is Computer Organization & Design by Hennessey & Patterson. You might look for an older edition on Amazon or Half.com. They’ll be a lot cheaper and have basically the same information.
These will both teach you the basics of how a processor works, assembly language, etc. This will help you understand how your program will be interpreted and thus, what sort of performance bottlenecks might exist based on your design.