I wrote a bit of code to replace jquery dropdowns to those found in twitter bootstrap.
http://jsfiddle.net/xuAQv/6/
Unfortunately the code just does not run correctly in IE versions 9 or less.
I have no idea how to debug the code and after trying to lint the code am still having issues.
Thanks in advance!
Solved it.
It was an internet explorer issue with Jquery Prepend.
For anyone that is interested the code is now on jsfidde:
http://jsfiddle.net/xuAQv/13/