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Home/ Questions/Q 8216435
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Editorial Team
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Editorial Team
Asked: June 7, 20262026-06-07T12:07:26+00:00 2026-06-07T12:07:26+00:00

I’m currently writing a small class to implement the Smith-Waterman algorithm in C++ in

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I’m currently writing a small class to implement the Smith-Waterman algorithm in C++ in Code Blocks 10.05 on Ubuntu 11.10, although I ran into the exact same problem on CodeBlocks on Windows, I added a class with the new class option and it seemed to generate valid .h and .cpp files.

But when I try to compile in smithwaterman.cpp it gives me an error on the line it wrote that #include "smithwaterman.h" saying it can’t find the file.

I can clearly see the file in the project at include/smithwaterman.h and I’ve tried to put the include/ but it doesn’t help, if I included it with it’s full path then it sees it but it seems like a very inelegant solution and right after that CodeBlocks blocked the .h file and I couldn’t edit it.

Also after finishing that dialog box which lets me define the class it asked me if I want to include it in both bin and debug and I said yes.

Has anyone encountered this sort of problem before?

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  1. Editorial Team
    Editorial Team
    2026-06-07T12:07:27+00:00Added an answer on June 7, 2026 at 12:07 pm

    Check out this link. It helped me out a lot with the same problem.

    http://codingexplorer.wordpress.com/2011/03/20/codeblocks-failed-to-find-the-header-file/

    Make sure when you add a folder to the search directory that the header and implementation file that you wish to include are in that folder, i.e. not in a folder within that folder.

    Cheers

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