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In tools -> options -> .NET Assemblies Enabled, it is possible to temporarily disable framework assemblies such as mscorlib and system. Is there anyway to do this on a per project basis such that the settings are persisted?
Framework/Third-Party assemblies are inferred automatically each time you open the NDepend Project Properties panel. So you can still discard them manually from thye .ndproj file XML content, but they’ll come back when you open the NDepend Project Properties panel. Why would you want to do that?