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Is there some way to do compilation of both code and processors in the same javac run? For example when the source tree contains:
a.java // with annotations
b.java // processor
c.java // referrencing files to be generated
Can I somehow compile it all with one javac invocation?
No, that’s not possible. Annotation processing is done in a separate round before compilation, at which point b.java would already have to be compiled. You need to separate compile runs. One for the processor, one for the rest.