Question

I’ve had this a few times, so here goes: I’m making some plots which hold curves with estimates of a parameter given a tuning parameter.

Typically, I also have SDs for each estimated value, so I could show error bars around each of them.

However, I don’t like error bars, and would prefer some smoothed version of it. This is in itself no problem (ie I know how to do this). However, my plot contains several of these similar curves, each one in its own color. So I would like to add the ‘smoothed errorregion’ to each curve in a color that matches the color of the curve itself. Of course, I would like to do this somewhat transparently, so I can still see the other curves through the ‘error region’.

So, my question is: given a color (specified by either a number, a name or an rgb value — note the first two pose an extra problem, but this is occurring rather often, as the basic plotting functions take these as valid color values), how can I find find the matching color that has the same rgb but a different (given) alpha level (transparency). I would like a function like:

makeTransparent<-function(someColor, alpha=100)
{
  newColor<-someColor + alpha #I wish
  return(newColor)
}

This should work for things like:

makeTransparent(2)
makeTransparent("red")
makeTransparent(rgb(0,0,1))

Edit I hate it when I miss something obvious, but @themel pointed me to it (thx again). Here’s a full solution (note: works vectorized, so you can pass more than one color; only one alpha is supported at this time though):

#note: always pass alpha on the 0-255 scale
makeTransparent<-function(someColor, alpha=100)
{
  newColor<-col2rgb(someColor)
  apply(newColor, 2, function(curcoldata){rgb(red=curcoldata[1], green=curcoldata[2],
    blue=curcoldata[3],alpha=alpha, maxColorValue=255)})
}

Answer 1

Have you had a look at ?rgb?

Usage:

rgb(red, green, blue, alpha, names = NULL, maxColorValue = 1)

An alpha transparency value can also be specified (as an opacity,
so ‘0’ means fully transparent and ‘max’ means opaque). If
alpha’ is not specified, an opaque colour is generated.

The alpha parameter is for specifying transparency. col2rgb splits R colors specified in other ways into RGB so you can feed them to rgb.