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Home/ Questions/Q 9306921
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Editorial Team
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Editorial Team
Asked: June 19, 20262026-06-19T00:16:42+00:00 2026-06-19T00:16:42+00:00

I’ve read how to remove a git submodule myself : # Delete the relevant

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I’ve read how to remove a git submodule myself:

# Delete the relevant section from the .gitmodules file.
git config -f .gitmodules --remove-section submodule.$submodulepath
# Delete the relevant section from .git/config
git config -f .git/config --remove-section submodule.$submodulepath
git rm --cached path_to_submodule    # no trailing slash
git commit
rm -rf path_to_submodule

I can do that. But when someone else does a git pull how do we ensure that the submodule is then removed from their system? The .gitmodules change comes with the pull, but not much else as far as I can tell. So the person who pulled would then still have to run

git config -f .git/config --remove-section submodule.$submodulepath
rm -rf path_to_submodule

Is that right? On a small development team I guess you could just tell everyone to run those commands, but it’s less than ideal.

Is there some magic command that automates this? In particular I’d like some standard way of automating this in deployment scripts. Off the top of my head I’m not sure how the scripts would even know that there was one less submodule than there previously was. (Not particularly attractive) options that occur to me are:

  • doing diffs on .gitmodules before and after pull
  • delete all submodules and then run git submodule update --init every single deploy.
  • The submodule does end up being an untracked file after the pull, so an option that would work would be to delete all untracked directories that contain a .git subdirectory after a pull, but you’re liable to delete stuff you wanted to keep that way.

Any better options appreciated.

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1 Answer

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  1. Editorial Team
    Editorial Team
    2026-06-19T00:16:43+00:00Added an answer on June 19, 2026 at 12:16 am

    For deploying code to servers having a git clean run after pull (via a post-checkout hook for example) is a safe option.

    As for updating developers’ repos, where running git clean is dangerous, I know no other way than pruning by hand.

    However the following (untested) script will do it automatically, name it something like git prune-submodules. It relates on the fact that after git pull, removed submodules are still listed in .git/config, so you can find out which one is to be archived.

    I’m quite novice in shell scripting, so please double-check.

    #!/bin/sh
    #get the list of submodules specified in .git/config
    #http://stackoverflow.com/questions/1260748/how-do-i-remove-a-git-submodule#comment9411108_7646931
    submodules_cfg=`git config -f .git/config -l | cut -d'=' -f1 | grep "submodule.$MODPATH" | sed 's/^submodule\.//' | sed 's/\.url$//'`
    
    #get the list of current submodules
    submodules=`git submodule | cut -b 2- | cut -d' ' -f 2`
    
    #archive submodule if listed in .git/config but doesn't exist anymore
    for submodule_cfg in $submodules_cfg; do
        submodule_cfg_exists=0
        for submodule in $submodules; do
             if [ "$submodule" == "$submodule_cfg" ]; then
                  submodule_cfg_exists=1
             fi
        done
    
        if ["$submodule_cfg_exists" == 0]; then
            mkdir -p archived-submodules
            mv $submodule_cfg archived-submodules/
            git config -f .git/config --remove-section submodule.$submodule_cfg
        fi
    done
    
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