The question is in the title. It should be silly. But… I really don’t see how!
The following are my building paths. Can anyone help ? The goal is to use pdf4eclipse and have a side-by-side view inside eclipse.

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You can change the output format in properties of your Latex project:
This has to be done on every Latex project. AFAIR there is no general settings that would allow to change this for all current and new projects.