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When saving a file that is being debugged, MATLAB would typically ask me if I wanted to proceed and warn me that saving the file to disk would exit the debug mode.
Recently MATLAB stopped showing me this warning. At the moment, if I type Ctrl-S to save the current file, MATLAB exits debug mode automatically without asking.
Is there an option that reverts this behavior?
Works for me so the behaviour hasn’t changed. I think that you selected the “Don’t show this dialog again” option. Look under “General\Confirmation Dialogs” in the preferences.