Question

Consider the following comma separated file. For simplicity let it contain one line:

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'I am quoted','so, can use comma inside - it is not separator here','but can\'t use escaped quote :=('

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If you try to read it with the command

table <- read.csv(filename, header=FALSE)

the line will be separated to 4 parts, because line contains 3 commas. In fact I want to read only 3 parts, one of which contains comma itself. There quote flag comes for help. I tried:

table <- read.csv(filename, header=FALSE, quote="'")

but that falls with error "incomplete final line found by readTableHeader on table". That happens because of odd (seven) number of quotes.

read.table() as well as scan() have parameter allowEscapes, but setting it to TRUE doesn’t help. It is ok, cause from help(scan) you can read:

The escapes which are interpreted are the control characters
‘\a, \b, \f, \n, \r, \t, \v’, …
… Any other escaped
character is treated as itself, including backslash

Please suggest how would you read such quoted csv-files, containing escaped \' quotes.

Answer 1

One possibility is to use readLines() to get everything read in as is, and then proceed by replacing the quote character by something else, eg :

tt <- readLines("F:/temp/test.txt")
tt <- gsub("([^\\]|^)'","\\1\"",tt) # replace ' by "
tt <- gsub("\\\\","\\",tt) # get rid of the double escape due to readLines

This allows you to read the vector tt in using a textConnection

zz <- textConnection(tt)
read.csv(zz,header=F,quote="\"") # give text input
close(zz)

Not the most beautiful solution, but it works (provided you don’t have a ” character somewhere in the file off course…)