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I don’t understand one thing about eGit…
when I commit a project, often (usually.. always?) not all files are checked. Why is that?
and is there any way that I can make it select all files by default?
The EGit 1.2 and lower releases do not automatically select untracked files in the commit dialog.
This behavior has changed in the 1.3 release due out on Feburary 24th, 2012.
A preference was added to the Team > Git > Commit Dialog preference page to enable this option so the files will be automatically selected.
This was added based on the bug report here.